Using a graph-based contrastive autoencoder architecture and a transformer to learn representations of protein-protein interaction interfaces – ranking the putative protein-protein interfaces.
Check out our recent work.
All posts by agursoy
Crosstalk in CVD and CI
Crosstalk between cardiovascular and cognitive diseases: using network biology to unveil shared proteins and pathways related to Vascular Cognitive impairment.
Check out our recent work:
Structural PPI networks
Structural PPI networks by PRISM
PRISM on K-Ras dimerization
GTP-Dependent K-Ras Dimerization
Structure, Volume 23, Issue 7, p1325–1335, 7 July 2015
Application of PRISM on TLR-4 pathway
The Architecture of the TIR Domain Signalosome in the Toll-like Receptor-4 Signaling Pathway
Scientific Reports 5, Article number: 13128 (2015)